Correction to: L_RNA_scaffolder: scaffolding genomes with transcripts
نویسندگان
چکیده
منابع مشابه
Scaffolding Large Genomes using Integer Linear Programming
The rapidly diminishing cost of genome sequencing is driving renewed interest in large scale genome sequencing programs such as Genome 10K (G10K). Despite renewed interest the assembly of large genomes from short reads is still an extremely resource intensive process. This work presents a scalable algorithms to create scaffolds, or ordered and oriented sets of assembled contigs, which is one pa...
متن کاملComparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes
Yersinia pestis is the causative agent of the bubonic plague, a disease responsible for several dramatic historical pandemics. Progress in ancient DNA (aDNA) sequencing rendered possible the sequencing of whole genomes of important human pathogens, including the ancient Y. pestis strains responsible for outbreaks of the bubonic plague in London in the 14th century and in Marseille in the 18th c...
متن کاملScaffolding feedback to maximize long-term error correction.
Scaffolded feedback was tested against three other feedback presentation methods (standard corrective feedback, minimal feedback, and answer-until-correct multiple-choice feedback) over both short- and long-term retention intervals in order to assess which method would produce the most robust gains in error correction. Scaffolded feedback was a method designed to take advantage of the benefits ...
متن کاملScaffolding low quality genomes using orthologous protein sequences
MOTIVATION The ready availability of next-generation sequencing has led to a situation where it is easy to produce very fragmentary genome assemblies. We present a pipeline, SWiPS (Scaffolding With Protein Sequences), that uses orthologous proteins to improve low quality genome assemblies. The protein sequences are used as guides to scaffold existing contigs, while simultaneously allowing the g...
متن کاملLINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
BACKGROUND Owing to the complexity of the assembly problem, we do not yet have complete genome sequences. The difficulty in assembling reads into finished genomes is exacerbated by sequence repeats and the inability of short reads to capture sufficient genomic information to resolve those problematic regions. In this regard, established and emerging long read technologies show great promise, bu...
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ژورنال
عنوان ژورنال: BMC Genomics
سال: 2019
ISSN: 1471-2164
DOI: 10.1186/s12864-019-5856-1